Saturday, April 30, 2016

Fungi Field Trip by Patrick Widjaja

On April 18th, we had a field trip to Pine Ridge Park to look at fungi for lab, which was refreshing after being in the biology lab for the quarter. When we arrived, we were greeted by our awesome guide Korena, and we started our walk through the park! It was really interesting since I see most of the organisms she pointed out in the park usually when I go to the park, but I never really paid much attention to them or understood their significance, and Korena did really open my eyes to this!

The very first organism we found was the lichen, which was actually composed of two organisms, fungi and and algae cells. It was really cool since I saw this everywhere, but never knew it was fungi! Here is a picture of it on a tree:


The lichen is the blueish-green organisms on the tree bark, and the fungi and algae that compose it have a mutualistic relationship where the algae photosynthesize sugars, and the fungi collects nutrients. Korena pointed out that on that tree, there were actually two different lichen types: the crusty ones on the right of the picture that look like dots, and the powdery ones on the left of the picture, which was really interesting to see in person! We continued our walk in the park and found more fungi called conks, and we found one growing on a dead log, so we got to see the decomposers in action! Here is a couple pictures of them: 

The fruiting bodies of the conks on the side of the log
As seen in the picture above, the fruiting bodies were already growing on the side of the log, and their mycelium were probably already growing inside the dead log, too. The white smear on the upper right of the picture was also part of the conk. 

As we continued our walk, Korena gave us some interesting fungi facts as well. She explained that the mycelium of fungi can span across entire forests, from one side to the other, which was just amazing to me. She also mentioned that they can signal each other when danger is present on one side of the forest, like a poison spill, so that the fungi on the other side of the forest can prepare for it! She also mentioned that the a fungi in Oregon is considered to be the 'largest' organism in the world by area!

We eventually stumbled upon the type of fungi where the fruiting body looked familiar to me. The first one was a basidiomycete by the look of its cap, and it's fruiting body looked like pancakes growing on the side of a dead log, which made me to presume that they are shelf fungi. Here is a picture of it: 


We also found another basidiomycete, but it's fruiting body was growing in the soil this time. Here is a picture of it: 


I could clearly see the gills, which were really smooth and fragile. The ring was still there, which was from when the cap of the mushroom opened up. Korena also mentioned that this particular mushroom was of the genus Amanita, the same genus of the death cap mushroom, the deadliest mushroom in the world, which was cool and slightly frightening at the same time! 

In the end, this field trip was a a good and fun way to observe fungi in the wild instead of doing so under a microscope in lab, and it was cool to see them in their natural habitat! I really appreciated this field trip and I would definitely be willing to do it again! 



Fungi Field Trip- Pine Ridge Park

About two weeks ago, the Biology 213 class did something different than the ordinary lab day; we stepped outside into the beautiful weather and went on a short hike to look at fungi. Although our class is taught by Gwen, the field trip was lead by Karina; a student at the University of Washington. Out of all three biology classes I have taken at EDCC, this was the first with a field trip. Pine Ridge Park is a beautiful park near EDCC and has water, forest, and a trail to guide through the woods. During this field trip, we looked at everything that I would NOT look at on a regular hike. Karina would stop and pick up a stick and talk about it, or flip over a log and point something out. It was amazing to me to realize how much goes unseen by the majority of people. There is a whole network of fungi throughout the woods. Throughout the field trip I saw fungi, lichen, mushrooms, and other fascinating things.

Karina energetically talked about a tree to us. This tree had many types of fungi, and lichen. She hypothesized that the tree was slowly dying from some fungi in the sapwood layer of the tree. This caused the tree to push out sap into a wound-looking section on the tree in attempt to expel the fungi. This tree also held 2 majorly visibly types of lichen; crust and powder lichen. These lichen were attached to the bark of the tree and held a mutualistic relationship with the tree. These lichens as well as the "sap wound" from the fungi inside the tree can be seen below;



In addition, Karina also showed us some fungi called conks, these were living on an old fallen tree. There were conks all over the log, and their mycellium were connected to each other throughout the log.

Finally, Karina showed us some basidiomycetes. The mushrooms had beautiful fruiting bodies. Although she could not defiantly name them, they were some form of Aminita. Interestingly, the Aminita mushroom family also holds the Death Angle, and the Death Cap; two of the most deadly mushrooms. In the picture below, many structures of the mushroom can be seen. The gills are exposed as well as the signature polka dotted top. The ring around the stem of the mushroom can also be seen clearly. Although this looks like all there is to see, the mycellium of this mushroom stretches to other trees and mushrooms, creating an underground network across the whole forest. These basidiomycetes can be seen in this picture below;


Along with being very educational, this field trip showed me how stepping of the trail and being observant can lead to some very interesting finds. Looking at a tree closely, turning over a log, or even picking up a stick can uncover some fascinating discoveries that would otherwise go completely unseen.


Friday, April 29, 2016

Lion's Mushroom & Pilobolus by MCDC

<LION’S MANE MUSHROOM PATCH & PILOBOLUS CULTURE KIT EXPERIENCE BY MCDC >
Group 4 (Dayeon Jung, Wenyi Fu , Mariam Elias, Conner Laursen)


LION’S MANE MUSHROOM PATCH


On April 4, 2016, our group set up our own Lion’s Mane mushroom patch by following the lab procedure. The growth of our mushroom lasted for more than two weeks in total. At the first one and two weeks, we did not see any mushrooms grew up. We asked other groups for advice; different groups gave the different suggestion, but all of our groupmates agreed that the water for the mushrooms was not enough. Therefore, we tried to spray the mushroom with plenty amount of water every day; eventually, those tiny mushrooms from figure number one appeared on April 20.  Although there were only a small amount of the mushrooms grew out. Those mushrooms are Lion’s Mane mushroom.


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Figure 1: Lion's Mane Mushrooms DAY 16
To have a better view of the mushroom, we tried to display our mushroom samples by few small pictures. Lion’s mane mushroom comes from Hericiaceae family and Hericium genus. As you can see, these mushrooms were white, and their shapes were different to the other common mushrooms that people can find in the markets. Although the culture we produced does not entirely display this, fully grown lion’s mane cultures have teeth like structure in place of the traditional mushroom cap. These teeth are where spores are released from. This mushroom, along with others in the Hericium genus has the most pronounced teeth. Lion’s mane has a plethora of medical benefits including neuroprotection and assistance with nerve growth, and treatment for depression/ anxiety. Lion’s mane mushrooms are relatively rare because they naturally grow near the tops of trees rather than the bottom where most mushroom fruit bodies grow.


Reference
"Lion's Mane Mushroom - Nootropic Review of Effects, Dosage, and More | Braintropic." Braintropic. Web. 29 Apr. 2016.


"The Lion's Mane Mushroom." Lion's Mane Mushroom. Web. 29 Apr. 2016.


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Figure 2: Amplification Parts of Lion's Mane Mushrooms
Kingdom: Fungi
Division: Basidiomycota
Class: Agaricomycetes
Order: Russulales
Family: Hericiaceae
Genus: Hericium
The figures below are the mushroom sample slides under 40X magnification. As you can see, it looks like a thin filament. There were nothing special being observed. Our group got this result in two weeks, and the mushroom we took was different than other groups.
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Figure 3: The slides of Shiitake Mushroom with 40X Magnification(from another group)
Kingdom: Fungi
Division: Basidiomycota
Class: Agaricomycetes
Order: Agaricales
Family: Marasmiaceae
Genus: Lentinula
Species: L. edodes


PILOBOLUS CULTURE KIT


On April 4, 2016, we also set up another system called Pilobolus culture kit, which was for observing how Pilobolus crystallinus explode their spores toward the sun. Our group followed the instructions from Carolina Biology Supply named “First Laboratory.” Different fungi have different traits; Pilobolus crystallinus have phototropism to adapt some specialized environments.


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Figure 4: Set up Pilobolus Culture Kit
Domain: Eukaryote
Kingdom: Fungi
Division: Zygomycota
Class: Mucoromycotina
Order: Mucorales
Family: Pilobolaceae
Genus: Pilobolus
Type species: Pilobolus crystallinus
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Figure 5: black sporangium
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Figure 6: Black Sporangia Under The Microscope
  • What are the two phyla that you observed?
            Pilobolus and lion’s mane mushroom
  • Compare and contrast the two species of fungi
The Pilobolus shoot their spores out toward the sun because their spores are on top of the water vesicle while the Lion Mane mushrooms do not; for Lion Mane mushroom, their spores are found in their gills; Shiitake grows on a log of wood while Pilobolus grows on dung
Pilobolus have mainly asexual reproduction
Pilobolus have crystals on their sporangia


Hericium Erinaceus (also called lion's mane mushroom, bearded tooth mushroom, satyr's beard, Bearded Hedgehog Mushroom, pom pom mushroom, or Bearded Tooth Fungus)
All species of Hericium are considered saprotrophs, meaning they feed on dead material. Hericium Erinaceus is also a parasite, meaning it attacks and kills living trees. They're found in late summer to fall on dead or dying hardwood trees, especially oak and beech. They grow in North America, China, Japan, and Europe. This doesn't look like your typical mushroom. It has no real cap and no stem. Instead, it sports long spines (greater than 1 cm) coming out from a single clump. Their color is mainly white, although they become brown or yellow with age. Their spore print is white as well. This is not a common species of mushroom, so finding one may be a rare treat. They grow higher up on trees rather than at the base, which means that they're also often missed during a mushroom hunt. Several species in the Hericium genus are referred to as "lion's mane" in North America. This article is specifically about Hericium Erinaceus, but you may also hear about these types of mushrooms: - See more at http://www.mushroom-appreciation.com/lions-mane.html#sthash.xetCTK6F.dpuf


  • Compare life cycles between Lion’s mane mushroom and Pilobolus
Lion's mane mushroom family is Hericiacease, and it is also called Bearded Tooth Mushroom. This species lives as a network of cells (mycelium) within dead trees as a saprobe, and in living trees as a parasite, digesting and decomposing the wood. When ready to reproduce, the mycelium develops the beardlike "fruiting body" that emerges from the wood—this is the reproductive structure. The life cycle of Pilobolus begins with a black sporangium that has been discharged onto a plant substrate such as grass. A herbivorous animal such as a horse then eats the substrate, unknowingly consuming the sporangium as well. The Pilobolus sporangium survives the passage through the gastrointestinal tract without germinating and emerges with the excrement. Once outside its host, spores within the sporangium germinate and grow as a mycelium within the excrement, where it is a primary colonizer. Later, the fungus fruits to produce more spores.pores are provided in the "teeth" and are released to begin new mycelia elsewhere.
Reference
"Bearded Tooth (Lion's Mane; Hedgehog Mushroom)." Missouri's Fish, Forests, and Wildlife. Web. 29 Apr. 2016.
"Pilobolus." Wikipedia. Wikimedia Foundation, Web. 29 Apr. 2016.


  • How successful were the cultures and why do you think they did/didn't grow well?
Our mushroom culture developed fruiting bodies much later than other cultures, maybe from the lack of water. Our culture eventually grew fruit bodies, and everything was alright.
  • What does that show you about the ecology of these different fungi?
Some fungi require different amounts of sunlight, water, humidity, etc. to grow properly which explains the late blooming of our culture.
  • What are some cool things that you observed?
The lion mane mushroom was very cool for us to observe because our group had a particular type of mushroom. Also, the Pilobolus culture kit shows us the spores did explode toward to the sun.
  • What are some unexpected things that you observed?
At the first two weeks, we did not have any mushrooms. Therefore, we considered our group failed in setting up the shiitake mushroom patch. However, after spraying more water and wait for two more days, we saw our mushroom. This is unexpected.
  • Did you think this was a useful assignment?
We believe that this is a useful task because I learned how to set up a better environment to grow mushrooms.
  • Was it fun?
It was fun although we did not have the opportunity to taste our mushroom. We were able to find the result every week, and we enjoyed each time when we check our mushroom. When we finally get the mushroom growing on the second week, we were so happy.
  • Did you learn something?
We learned that how to set up the mushroom and the Pilobolus culture kit. We also observed the growing of the mushroom in real life. We also saw the spores for the first time.
  • Would you recommend it for next year's students?
We will recommend it to next year's students because those labs are funny; also, we can learn to work as a group.

The "Fun Gi's" Shiitake and Pilobolus Parenting Adventure

The "Fun Gi's" Shiitake and Pilobolus Parenting Adventure


The following post details the growth and adventure of Oliver, mushroom log extraordinaire.


Oliver is a shiitake mushroom log and belongs in the following classifications:


Kingdom: Fungi
Division: Basidiomycota
Class: Agaricomycetes
Order: Agaricales
Family: Marasmiaceae
Genus: Lentinula
Species: L. edodes


We began growing Olivier on the first day of lab. We started off why soaking him in water and letting him set for two hours before putting him under the humidity tent as shown below.


April 4th, 2016:


The instructions were to water him around two or three times a day, however our group could not physically accomplish this task. We settled for watering him 2-3 times a week instead. Our lack of mushroom growth might be due to this lack of watering. The first day we saw any mushroom growth was April 13th, but by then the mushrooms were no longer small, so they probably grew in during the weekend where we could not observe their growth.

April 13th, 2016:


We had a total of 4 mushrooms grow, which we proceeded to named after each member of the group. Unfortunately, Lana the Loner mushroom cannot be seen in this picture because she is hidden in the back.


April 18th, 2016:


The 4 mushrooms continued to grow larger, but there was no new mushroom growth. We decided to harvest Kevin in order to examine him closer.

April 20th, 2016:


Here you can see that all the mushrooms left on the log. Although we didn’t have a large quantity of growth, the ones that did were high quality. They grew very big and were not soggy like some other group’s were.


Below is a closer look at the gills and stem of our mushrooms:

Gills at 40x Magnification


Stem at 40x Magnification
Pilobolus

We also grew the pilobolus mushroom. We grew it in horse dung then covered it with a cup that had a small circle to let the light in. The idea was that the mushroom would grow towards the source of light which it did.


The pilobolus mushroom belongs in the following classifications:


Kingdom: Fungi
Division: Zygomycota
Class: Mucoromycotina
Order: Mucorales
Family: Pilobolaceae
Genus: Pilobolus
Species: ?


This is the dung in which the pilobolus was grown in. As you can see, the pilobolus all grew in relatively the same direction towards the light source.


A closer look under the dissecting scope:


Although both the shitake and the pilobolus can reproduce sexually, in this case, the latter produced spores asexually. It did so by use of sporangia (the tiny black dots on the tips of the sporangiophores above).




The black “dots” seen on the inside of the cup are spores released from the sporangium.

What happened to our shiitake mushrooms in the end? Lana the Cook happened:


Aesthetically pleasing mushrooms on a brown bag (Gwen advised that Teka mushroom not be cooked, as it was pretty soggy)


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Sliced mushrooms, onions, and garlic in preparation for sautéing. Unfortunately, they ended tasting steamed rather than sautéed, although they were still yummy.


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The end result: a toned-down version of mushroom and buckwheat risotto. 4 stars out 5. Took forever to finish.


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Pilabolous vs. Shitake:
Besides both being in the Fungi Kingdom, the two mushrooms do not share much else. Appearance-wise, they look nothing alike, and they also grow very differently from one another.
The main distinction comes from their division in the Kingdom. The shiitake mushroom is under the basidiomycetes division while the pilobolus is under the zygomycota division. We learned about both these division in class, including their characteristics and life cycles.


Shiitake mushroom life cycle:
We first start with spores. The spores develop on the hymenium which is a tissue layer that can be found on the gills, teeth, or pores which are often located beneath the cap of the mushroom. A mature mushroom can produce millions of spores in a single day. They ejected from the mushroom into the environment. When a spore lands in a suitable place, it quickly germinates, producing a single-cell filament called a hypha. It then starts to grow and extend to find a suitable mate. Spores are like egg and sperm cells in that they are haploid and need to join a mate (other hypha) to become diploid. Once the spore does find a mate to attach to the hyphae form and produce a network called the mycelium. The mycelium then has all the genetic material now to grow through the environment and produce more mushrooms. The mycelium will continue to extend and become more dense in order to get more energy and better search for food and water.


Pilobolus mushroom life cycle:
The spores of this fungi begin their life in dung, after sporangia is consumed by an unknowing herbivore. Once the sporangia is consumed, it waits until it is pooped out before the spores are able to germinate. The spores will grow its mycelium within the dung that it resides in. It is the asexual fruiting structure that we see grow on top of the excrement. This structure, the sporangiophore, is able to grow in the direction of a light source as we have observed in our own pilobolus. When there is enough pressure in the structure, the spores will be shoot out into the distance. This mechanism is to help ensure that other herbivores will eat the spores and begin the cycle anew. Having spores too close to the dung it was grown in would reduce the chances of animals eating it.

Summary table of the differences and similarities between Pilobolus and Shiitake:


Shiitake
Similarities
Pilobolus
-Grows in forest
-has large underground mycelium networks.
-reproduces with other mates with there hyphae
-edible by humans
- spores on the hymenium tissue

-Have spores
-shoot spores into the environment to reproduce
-Produces asexually
-Have mycelium
-Grows in dung
-Shoots spores further
-Not edible by humans (or at least you wouldn’t want to)
-Does not often sexually reproduce
-Grows towards sunlight

Was this a useful assignment?
We think it was. It was cool to see in person this life cycle and be able to kind of name and attach to different mushrooms. Once we named the mushrooms we all got attached and really enjoyed seeing which ones would grow more. Seeing these mushrooms in lab and at the park made it more understandable to our group in that we could really see and get a better explanation then just reading about the lifecycles in the book. We were like the parents of these mushrooms and it was much more fun than seeing drawings of the life cycles in the book. I would say that this experiment was useful and I would recommend it to next quarters students. Its easier to understand and I felt like I learned it better instead of memorizing the cycle.